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TITLE:  Global Project on Genetic Variation Begins Scientists Hope Effort
        Leads to Better Understanding of Common Diseases' Hereditary Basis
SOURCE: Washington Post, USA, by Justin Gillis
        http://www.washingtonpost.com/wp-dyn/articles/A37999-2002Oct29.html
DATE:   Oct 30, 2002

------------------ archive: http://www.gene.ch/genet.html ------------------


Global Project on Genetic Variation Begins Scientists Hope Effort Leads to 
Better Understanding of Common Diseases' Hereditary Basis

A worldwide coalition of scientists launched a broad effort yesterday to 
understand human genetic variation, vowing to create a new type of gene map 
that may propel medical research forward by explaining such common ailments 
as heart attacks, diabetes and obesity.

The three-year, $100 million project is one of the biggest scientific 
undertakings since the Human Genome Project, out of which it grows. 
Scientists will study genes from people in Japan, China, Africa and the 
United States, a geographic range that they believe will reveal most, if 
not all, of the common human genetic variations.

The analytical work will be carried out in public and private laboratories 
in the United States, Britain, Japan, Canada and China.

The project could have "a profound impact on the future of medicine," said 
Francis S. Collins, director of the National Human Genome Research 
Institute in Bethesda, a prime sponsor. He said at a news conference in 
Washington yesterday that it was an essential next step in turning the 
promise of the Human Genome Project into concrete health information.

The Human Genome Project, which produced draft genetic maps two years ago 
amid White House fanfare, is an effort to determine the genetic makeup of 
what amounts to a theoretical average person. With a nearly complete 
reference genome in hand, scientists now need to know the ways in which 
people diverge from that average -- and to determine which of those 
patterns can be linked to illness.

Some efforts have been made in this direction already, particularly by a 
coalition of public laboratories and large drug companies. But the new 
project is designed to be more complete.

It is expected to take advantage of a key discovery about human genetic 
variability. Instead of being transmitted to succeeding generations at 
random, genes tend to be passed down in large blocks. These gene groups are 
known as haplotypes, and the project announced yesterday is called the 
International HapMap Project.

For a given haplotype, scientists expect to find only three or four common 
variations, even in ethnic groups separated by oceans and thousands of 
years of evolution. The subtle genetic differences among these variants are 
believed to produce subtly different chemistry in people's bodies, and the 
cumulative effects over a lifetime may help explain why some people suffer 
from heart attacks, others from cancer, and so forth.

Scientists have long hunted associations between genes and illness, with 
notable success in diseases caused by a single defect.

But mankind's great killers are believed to be caused, or accelerated, by 
patterns of a dozen or so genes working together, and scientists have had a 
harder time nailing down those associations, in part because they lacked a 
catalogue of the common variants.

"The HapMap project will create a powerful tool for linking differences in 
the genome to differences in health, including increased risk for common 
illnesses," said Huanming Yang, director of a genetic institute in Beijing 
and leader of China's contribution to the project.

There is potential for controversy. The HapMap project superficially 
resembles the Human Genome Diversity Project, an attempt more than a decade 
ago to use genetic sampling to determine relationships of the world's 
ethnic groups and, particularly, to determine how small, isolated groups 
might differ biologically from the mainstream.

That project was eventually scrapped after a storm of protest in poor 
countries that it might lead to exploitation of vulnerable populations, 
including patents in Western countries on the genetic variations found in 
remote tribes. Opponents labeled it the "vampire project."

HapMap organizers, including ethicists, said yesterday they had taken pains 
to avoid repeating the mistakes of the Human Genome Diversity Project. 
Their goals are medical, not anthropological. They will carefully solicit 
informed consent from genetic donors and go to great lengths to protect 
identities, the organizers said.

And the donors are expected to come from large groups: people of Han 
Chinese and Japanese ancestry, people from the Yoruba group in Nigeria, and 
Americans of European ancestry.



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